The runtime now discovers both legacy and current Claude config files at
user and project scope, merges them in precedence order, and carries the
resolved model, permission mode, instruction files, and MCP server
configuration into session startup.
This keeps CLI defaults aligned with project policy and exposes configured
MCP tools without requiring manual flags.
Constraint: Must support both legacy .claude.json and current .claude/settings.json layouts
Constraint: Session startup must preserve CLI flag precedence over config defaults
Rejected: Read only project settings files | would ignore user-scoped defaults and MCP servers
Rejected: Delay MCP tool discovery until first tool call | model would not see configured MCP tools during planning
Confidence: high
Scope-risk: moderate
Reversibility: clean
Directive: Keep config precedence synchronized between prompt loading, session startup, and status reporting
Tested: cargo fmt --all --check; cargo clippy --workspace --all-targets --all-features -- -D warnings; cargo test --workspace --all-features
Not-tested: Live remote MCP servers and interactive REPL session startup against external services
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